Environmental factors influencing the distribution of rRNA from Verrucomicrobia in soil

The Verrucomicrobia constitute a newly discovered division of the Bacteria identified as a numerically abundant component of soil microbial communities in numerous sites around the world. The relative abundance of rRNA from Verrucomicrobia was investigated in the soil to examine the influence of specific environmental factors on the distribution of Verrucomicrobia and to better understand the distribution of this group in terrestrial ecosystems. The abundance of the verrucomicrobial rRNA was determined by using a novel oligonucleotide probe that is specific for verrucomicrobial 16S rRNA. The abundance of verrucomicrobial 16S rRNA in soil microbial communities was determined in relation to plant community composition and soil management history over a period of 2 years. Additional samples were analyzed to determine if verrucomicrobial rRNA relative abundance changes in relation to either soil depth or soil moisture content. The Verrucomicrobia composed 1.9+/-0.2% of the microbial community rRNA present in the 85 soil samples examined. The distribution of verrucomicrobial rRNA in the soil reveals that Verrucomicrobia are significantly affected by environmental characteristics that change in relation to time, soil history, and soil depth, and reveals that a statistically significant amount of the variation in verrucomicrobial rRNA abundance can be explained by changes in soil moisture content.     

Comparative Biogeography of Grasshoppers (Orthoptera: Acrididae) in North America and Siberia: Applications to the Conservation of Biodiversity

The objective of this study was to apply knowledge of holarctic grasshopper biogeography in representative, temperate ecosystems (Russia, South Siberia, Sayans region; 685,000km² and USA, Wyoming; 272,000km²) to develop a comparative basis for understanding and conserving insect biodiversity. Maps of species distributions and vegetation zones were digitized, and a Geographic Information System was used to identify habitats with the greatest biodiversity and to characterize this diversity as a function of selected attributes. With respect to subfamilies, the greatest differences were in cold, mesic zones, where gomphocerines and melanoplines were dominant in Sayans and Wyoming, respectively. In terms of mobility, the Sayans has more flightless species and individuals, with the taiga supporting the greatest frequency of flightless acridids in both countries. With regard to feeding types, the diversity and richness of graminivores and forbivores were similar in the two regions, but mixed feeders were much more frequent in Wyoming. In the Sayans and Wyoming, pest species were most common in boreal and prairie zones, respectively. Ecoregions with a high diversity of pests also supported a high diversity of rare species. Shrub and desert zones supported many rare species in both countries. Thus, in terms of conservation, the Sayans' acridofauna appears to be at greater risk in terms of ecological vulnerability; acridid biodiversity is dispersed among habitats, with high frequencies of flightless and oligophagous species. The acridofauna of Wyoming could be conserved in fewer habitats than in the Sayans, but these habitats are subject to considerable human disturbance.     

西双版纳人工林林窗光照剖线分布特征

以林窗北缘为中心,研究了西双版纳地区橡胶林林窗及周边Ｎ－Ｓ样带上光照水平梯度分布。结果表明：林窗的发生导致光照明显增加,从林内到林窗中央,光强呈明显增大趋势,上午雾末消退时,相对光照强度水平梯度变化曲线峰值出现于林窗中央,午后雾消退后,林窗边缘为相对光强梯度变化最甚的地段,峰值由林窗中央向林窗北缘移进。林窗边缘,林窗中央及林内光照强度日变化曲线均为不对称的单峰型,但峰值出现和振幅不同。在太阳高度角     

Effect of hibernation, thyroid hormones and dexamethasone on cytosolic and mitochondrial glycerol-3-phosphate dehydrogenase from jerboa (Jaculus orientalis)

Tissue distribution of the cytosolic and mitochondrial glycerol-3-phosphate dehydrogenase (cGPDH and mGPDH) activities in jerboa (Jaculus orientalis), a hibernator, shows the highest level of enzyme activity in skeletal muscle and brown adipose tissue, respectively. The effect of hibernation on cGPDH indicates an increase of activity in all tissues examined. In contrast, hibernation decreases mGPDH activity in all tissues, except skeletal muscle. The effect of thyroid hormones on GPDH activity was tissue specific: in kidneys, cGPDH activity doubled in euthermic jerboas treated with T4. In contrast, 6-n-propyl-2-thiouracil treatment provokes an increase of enzyme activity in brown adipose tissue, liver and brain. T4 treatment leads to a 2.7-fold increase in liver mGPDH activity. 6-n-propyl-2-thiouracil treatment decreases mGPDH activity in the skeletal muscle whereas the opposite effect was observed in brain. Dexamethasone stimulates cGPDH in all tissues examined, except skeletal muscle and kidneys. In the case of mGPDH activity, this increase was observed only for brown adipose tissue and brain. Our results suggest that hibernation, thyroid hormones and dexamethasone probably play a role in the regulation of cGPDH and mGPDH activities in jerboa. Our findings confirm that these enzymes are involved in metabolic adaptation to thermal stress in Jaculus orientalis.     

Modelling Spatio-Temporal Effects of Environment on Atlantic Herring, <Emphasis Type="Italic">Clupea harengus</Emphasis>

Trends in mean abundance of North Sea Atlantic herring, Clupea harengus, over the period of 1992–1995, were modelled as a function of spatial location and ocean environmental conditions using generalized additive models (GAM). In all four years, the average herring abundance was found to be highest in latitudes around 60.5°N, and decreased with increasing latitude. The thermocline depth had a significant effect on prespawning herring abundance both directly, as a main effect, and indirectly, through its interactive effect with the temperature at 60m. Average herring abundance was highest in areas having deeper thermocline depths (up to 45m) and temperatures at 60m between 9 and 11°C. Prespawning herring abundance was greater in areas of cooler surface waters in the south than in the north. Well-mixed waters and transition zones between frontal and stratified areas having sea surface temperatures mainly between 11 and 12°C and to a lesser extent between 13 and 14°C were associated with the highest herring abundance. Herring appeared to avoid the cold bottom waters in summer. Multiyear GAM analysis revealed consistent environmental preferenda of herring and affirmed further a significant decrease in herring abundance. As herring numbers declined, the population aggregated in the most preferred areas. The inter-relationships of herring and environmental factors across the study period, were similar in their structure and significance, suggesting that preferred areas for location of herring can be reasonably predicted.     

Ragweed plants and airborne pollen in the Baltic states

Presence of pollen in the atmosphere was determined inTartu in 1989–1997, in Kuressaare in 1996–1997 and iniauliai in 1997. Ragweed airpollen was found in latesummer in three years. The distribution, abundance andflowering of local ragweed plants were estimated. Itappeared that the number of local sources did notexceed twenty per country per year. Majority of thesesources consisted of a small number of pollinating A. artemisiifolia individuals. The largest localsources, consisting of several hundreds ofindividuals, were exclusively rare. Transport ofragweed pollen by air masses from distant sources wasstudied. It was found that incursions of ragweedpollen were determined by air fluxes originating fromthe Ukraine as well as from the southeastern andsouthern regions of the European part of Russia. Theseincursions occurred in extensive high-pressure areaswhose centre was located in the central region of theEuropean part of Russia with a periphery extending tothe Baltic countries.     

Confidence intervals for the mean of diagnostic test charge data containing zeros

In this paper, we consider the problem of interval estimation for the mean of diagnostic test charges. Diagnostic test charge data may contain zero values, and the nonzero values can often be modeled by a log-normal distribution. Under such a model, we propose three different interval estimation procedures: a percentile-t bootstrap interval based on sufficient statistics and two likelihood-based confidence intervals. For theoretical properties, we show that the two likelihood-based one-sided confidence intervals are only first-order accurate and that the bootstrap-based one-sided confidence interval is second-order accurate. For two-sided confidence intervals, all three proposed methods are second-order accurate. A simulation study in finite-sample sizes suggests all three proposed intervals outperform a widely used minimum variance unbiased estimator (MVUE)-based interval except for the case of one-sided lower end-point intervals when the skewness is very small. Among the proposed one-sided intervals, the bootstrap interval has the best coverage accuracy. For the two-sided intervals, when the sample size is small, the bootstrap method still yields the best coverage accuracy unless the skewness is very small, in which case the bias-corrected ML method has the best accuracy. When the sample size is large, all three proposed intervals have similar coverage accuracy. Finally, we analyze with the proposed methods one real example assessing diagnostic test charges among older adults with depression.     

Estimation and testing with overdispersed proportions using the beta-logistic regression model of Heckman and Willis

Methods are presented for modeling dose-related effects in proportion data when extra-binomial variability is a concern. Motivation is taken from experiments in developmental toxicology, where similarity among conceptuses within a litter leads to intralitter correlations and to overdispersion in the observed proportions. Appeal is made to the well-known beta-binomial distribution to represent the overdispersion. From this, an exponential function of the linear predictor is used to model the dose-response relationship. The specification was introduced previously for econometric applications by Heckman and Willis; it induces a form of logistic regression for the mean response, together with a reciprocal biexponential model for the intralitter correlation. Large-sample, likelihood-based methods for estimating and testing the joint proportion-correlation response are studied. A developmental toxicity data set illustrates the methods.     

Oak canopy effects on the distribution patterns of two annual grasses: the role of competition and soil nutrients

Within the oak woodlands of California there is often a distinct shift in the botanical composition between the open grassland and the herbaceous understory beneath oak canopy. Botanical sampling at two woodland sites indicated that the annual grass Bromus diandrus was dominant under deciduous blue oak canopy, while a congener, Bromus hordeaceus, was dominant in open grassland. We examined the relative importance of congeneric competition and edaphic factors in creating these differences in species distribution in two separate field experiments that manipulated both congeneric and intraspecific competition, as well as soil type. We used the demographic measure of relative reproductive rate as an index of population growth. In general, demographic performance correctly predicted the distribution of the two annual grasses in the field. Our results indicate that reduced abundance of B. hordeaceus under canopy reflects the negative effects of competition with B. diandrus. In contrast, B. diandrus is little affected by competition from B. hordeaceus. The reduced abundance of B. diandrus in open grassland may result, in part, from its inability to adapt as well as B. hordeaceus to lower nutrient availability in soils of the open grassland.     

Nickel absorption and distribution from rat small intestine In situ

The aim of this work was to study the absorption of nickel chloride in rats by means of the intestinal perfusion in situ technique at nickel concentrations of 1, 5, 10, 25, and 100 mg/L. Active transport and facilitated diffusion seem to play an important role in the intestinal absorption of nickel at concentrations≤10 mg/L. At higher concentrations, the absorption rate would be limited by saturation of the carriers. The distribution of the absorbed nickel was studied by intestinal perfusion of a 10-mg Ni/L solution for 30 or 60 min. Both in concentration and amount, the jejunum showed the higher values of absorbed nickel, followed by the kidneys and liver. When all of the collected organs (brain, heart, liver, lungs, spleen, kidneys, and testicles) and blood, but not the small intestine, are analyzed following a 60-min perfusion, it was found that 1% of the initial concentration had passed through the intestinal barrier.